Summary information

Study title

Genome-wide DNA methylation profiles across four UK population based cohorts 2015-2018

Creator

Bell, J, King's College London

Study number / PID

853526 (UKDA)

10.5255/UKDA-SN-853526 (DOI)

Data access

Restricted

Series

Not available

Abstract

We obtained newly-generated genome-wide DNA methylation profiles from whole blood in 240 individuals from the TwinsUK cohort. DNA methylation levels were profiled at 38-86 years of age using the Infinium MethylationEPIC BeadChip. Epigenetic mechanisms such as DNA methylation are key regulators of gene function. Epigenetic signals are malleable and can change in response to internal and external stimuli. The epigenome thereby provides a mechanism of interaction between the genome with the environment, and we hypothesize that early life stimuli and exposures over the life course leave an epigenetic mark. The proposal will explore DNA methylation in 4,024 samples from four British cohort studies (the MRC National Survey for Health and Development (NSHD) or 1946 birth cohort, the National Child Development Study (NCDS) or 1958 birth cohort, the 1970 British Cohort Study (BCS70), and the TwinsUK cohort (TwinsUK)) in order to identify epigenetic signatures of early life experience and exposure to social, environmental, and biological stimuli over the life course, linking findings to changes in physical and cognitive function during ageing. Each study captures a range of early life experiences, longitudinal health measures and lifestyle questionnaire data from adult life, DNA samples collected at single or multiple time-points, and in a sample subset, multiple genomic data for follow-up analyses. The primary research design is a prospective analysis of longitudinal data across 2,336 blood and 1,688 buccal samples from the four cohorts. The first aim of the research will be to establish whether biological, environmental, and social stimuli in early life and over the life course result in detectable differences in DNA methylation profiles in adults. We will consider whether there are epigenetic associations with a number of factors including biological, environmental and social factors in utero and in early childhood (e.g. birthweight, childhood growth, maternal smoking...
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Topics

Methodology

Data collection period

01/10/2015 - 30/09/2018

Country

United Kingdom

Time dimension

Not available

Analysis unit

Individual

Universe

Not available

Sampling procedure

Not available

Kind of data

Numeric

Data collection mode

Illumina Infinium MethylationEPIC Kit. DNA samples from whole blood were profiled for genome-wide DNA methylation using the Illumina Infinium MethylationEPIC BeadChip. Following bisulfite conversion, samples were hybridised to Illumina beadchips and intensity values were scored. The data were converted to DNA methylation levels across the genome, quantified using methylation beta-values.

Funding information

Grant number

ES/N000404/1

Access

Publisher

UK Data Service

Publication year

2020

Terms of data access

The Data Collection is available for download to users registered with the UK Data Service.

Related publications

Not available