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Genome-wide DNA methylation profiles across four UK population based cohorts 2015-2018
Creator
Bell, J, King's College London
Study number / PID
853526 (UKDA)
10.5255/UKDA-SN-853526 (DOI)
Data access
Restricted
Series
Not available
Abstract
We obtained newly-generated genome-wide DNA methylation profiles from whole blood in 240 individuals from the TwinsUK cohort. DNA methylation levels were profiled at 38-86 years of age using the Infinium MethylationEPIC BeadChip. Epigenetic mechanisms such as DNA methylation are key regulators of gene function. Epigenetic signals are malleable and can change in response to internal and external stimuli. The epigenome thereby provides a mechanism of interaction between the genome with the environment, and we hypothesize that early life stimuli and exposures over the life course leave an epigenetic mark.
The proposal will explore DNA methylation in 4,024 samples from four British cohort studies (the MRC National Survey for Health and Development (NSHD) or 1946 birth cohort, the National Child Development Study (NCDS) or 1958 birth cohort, the 1970 British Cohort Study (BCS70), and the TwinsUK cohort (TwinsUK)) in order to identify epigenetic signatures of early life experience and exposure to social, environmental, and biological stimuli over the life course, linking findings to changes in physical and cognitive function during ageing. Each study captures a range of early life experiences, longitudinal health measures and lifestyle questionnaire data from adult life, DNA samples collected at single or multiple time-points, and in a sample subset, multiple genomic data for follow-up analyses.
The primary research design is a prospective analysis of longitudinal data across 2,336 blood and 1,688 buccal samples from the four cohorts. The first aim of the research will be to establish whether biological, environmental, and social stimuli in early life and over the life course result in detectable differences in DNA methylation profiles in adults. We will consider whether there are epigenetic associations with a number of factors including biological, environmental and social factors in utero and in early childhood (e.g. birthweight, childhood growth, maternal smoking...
Terminology used is generally based on DDI controlled vocabularies: Time Method, Analysis Unit, Sampling Procedure and Mode of Collection, available at CESSDA Vocabulary Service.
Methodology
Data collection period
01/10/2015 - 30/09/2018
Country
United Kingdom
Time dimension
Not available
Analysis unit
Individual
Universe
Not available
Sampling procedure
Not available
Kind of data
Numeric
Data collection mode
Illumina Infinium MethylationEPIC Kit. DNA samples from whole blood were profiled for genome-wide DNA methylation using the Illumina Infinium MethylationEPIC BeadChip. Following bisulfite conversion, samples were hybridised to Illumina beadchips and intensity values were scored. The data were converted to DNA methylation levels across the genome, quantified using methylation beta-values.
Funding information
Grant number
ES/N000404/1
Access
Publisher
UK Data Service
Publication year
2020
Terms of data access
The Data Collection is available for download to users registered with the UK Data Service.